Proteome 2D-PAGE Database - References

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Lange S, Rosenkrands I, Stein R, P Andersen P, Kaufmann SHE, Jungblut PR (2014) Analysis of protein species differentiation among mycobacterial low-Mr-secreted proteins by narrow pH range Immobiline gel 2-DE-MALDI-MS. J Prot 97: 235-244. (Show gel)

Thiede B, Koehler CJ, Strozynski M, Treumann A, Stein R, Zimny-Arndt U, Schmid M, and Jungblut PR (2013) Protein species high resolution quantitative proteomics of HeLa cells using SILAC-2-DE-nanoLC/LTQ-Orbitrap mass spectrometry. Mol Cell Proteomics 12: 529-538. (Show gel)

Schwab K, Stein R, Scheler C, Theuring F (2012) Dietary genistein enhances phosphorylation of regulatory myosin light chain in the myocardium of ovariectomized mice. Electrophoresis 33: 1795-1803. (Show gel)

Holland C, Schmid M, Zimny-Arndt U, Rohloff J, Stein R, Jungblut PR, Meyer TF (2011) Quantitative phosphoproteomics reveals link between Helicobacter pylori infection and RNA splicing modulation in host cells. Proteomics 11: 2798-2811. (Show gel)

Schwab K, Neumann B, Vignon-Zellweger N, Fischer A, Jungblut PR, Stein R, Scheler C, Theuring F (2011) Dietary Phytoestrogen Supplementation induces Sex Differences in the Myocardial Protein Pattern of Mice: A Comparative Proteomics Study. Proteomics 11: 3887-3904. (Show gel)

Bouchal P, Struhárová I, Budinská E, Sedo O, Vyhlídalová T, Zdráhal Z, van Spanning R, Kucera I. (2010) Unraveling an FNR based regulatory circuit in Paracoccus denitrificans using a proteomics-based approach. Biochim Biophys Acta 1804: 1350-1358. (Show gels)

Jungblut PR, Schiele F, Zimny-Arndt U, Ackermann R, Schmid M, Lange S, Stein R, Pleissner KP (2010) Helicobacter pylori proteomics by 2-DE/MS, 1-DE-LC/MS and functional data mining . Proteomics 10: 182-193. (Show gel)

Li Zhu, Ge Zhao, Robert Stein, Xuexue Zheng, Wei Hu, Na Shang, Xin Bu, Xiankai Liu, Jie Wang, Erling Feng, Bin Wang, Xuemin Zhang, Qinong Ye, Peitang Huang, Ming Zeng, Hengliang Wang (2010) The proteome of Shigella flexneri 2a 2457T grown at 30 and 37 degrees C. Mol Cell Proteomics 9: 1209-1220. (Show gels)

Hoehenwarter W, Tang Y, Ackermann R, Pleissner KP, Schmid M, Stein R, Zimny-Arndt U, Kumar NM, Jungblut PR (2008) Identification of proteins that modify cataract of mouse eye lens. Proteomics 8: 5011-5024. (Show gels)

Jungblut PR, Holzhütter HG, Apweiler R, Schlüter H (2008) The speciation of the proteome. Chem Cent J 2.

Chen XH, Koumoutsi A, Scholz R, Eisenreich A, Schneider K, Heinemeyer I, Morgenstern B, Voss B, Hess WR, Reva O, Junge H, Voigt B, Jungblut PR, Vater J, Süssmuth R, Liesegang H, Strittmatter A, Gott (2007) Comparative analysis of the complete genome sequence of the plant growth promoting Bacillus amyloliquefaciens FZB42. Nat Biotechnol 25: 1007-1014. (Show gels)

Mattow J, Siejak F, Hagens K, Schmidt F, Koehler C, Treumann A, Schaible UE, Kaufmann SH (2007) An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteria. Proteomics 7: 1687-1701. (Show gels)

Rison SC, Mattow J, Jungblut PR, Stoker NG (2007) Experimental determination of translational starts using peptide mass mapping and tandem mass spectrometry within the proteome of Mycobacterium tuberculosis. Microbiology 153: 521-528.

Hoehenwarter W, Klose J, Jungblut PR (2006) Eye lens proteomics. Amino Acids 30: 369-389. (Show gels)

Mattow J, Siejak F, Hagens K, Becher D, Albrecht D, Krah A, Schmidt F, Jungblut PR, Kaufmann SH, Schaible UE (2006) Proteins unique to intraphagosomally grown Mycobacterium tuberculosis. Proteomics 6: 2485-2494. (Show gel)

Schmidt F, Dahlmann B, Janek K, Kloß A, Wacker M, Ackermann R, Thiede B, Jungblut PR (2006) Comprehensive quantitative proteome analysis of 20S proteasomesubtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches. Proteomics 6: 4622-4632. (Show gels)

Skriner K, Adolph K, Jungblut PR, Burmester GR (2006) Association of citrullinated proteins with synovial exosomes. Arthritis Rheum 54: 3809-3814. (Show gel)

Backert S, Kwok T, Schmid M, Selbach M, Moese S, Peek RM Jr, Konig W, Meyer TF, Jungblut PR (2005) Subproteomes of soluble and structure-bound Helicobacter pylori proteins analyzed by two-dimensional gel electrophoresis and mass spectrometry. Proteomics 5: 1331-1345. (Show gels)

Havlasova J, Hernychova L, Brychta M, Hubalek M, Lenco J, Larsson P, Lundqvist M, Forsman M, Krocova Z, Stulik J, Macela A (2005) Proteomic analysis of anti-Francisella tularensis LVS antibody response in. Proteomics 5: 2090-2103. (Show gels)

Hoehenwarter W, Kumar NM, Wacker M, Zimny-Arndt U, Klose J, Jungblut PR (2005) Eye lens proteomics: from global approach to detailed information about phakinin and gamma E and F crystallin genes. Proteomics 5: 245-257. (Show gels)

Lenco J, Pavkova I, Hubalek M, Stulik J (2005) Insights into the oxidative stress response in Francisella tularensis LVS and its mutant DeltaiglC1+2 by proteomics analysis. FEMS Microbiol Lett 246: 47-54. (Show gel)

Pavkova I, Hubalek M, Zechovska J, Lenco J, Stulik J (2005) Francisella tularensis live vaccine strain: Proteomic analysis of membrane proteins enriched fraction. Proteomics 5: 2460-2467. (Show gel)

Thiede B, Hohenwarter W, Krah A, Mattow J, Schmid M, Schmidt F, Jungblut PR (2005) Peptide mass fingerprinting. Methods 35: 237-247.

Thomas A Rhomberg, Olof Karlberg, Thierry Mini, Ursula Zimny-Arndt, Ulrika Wickenberg, Marlene Röttgen, Peter R Jungblut, Paul Jenö, Siv G E Andersson, Christoph Dehio (2004) Proteomic analysis of the sarcosine-insoluble outer membrane fraction of the bacterial pathogen Bartonella henselae. Proteomics 4: 3021-3033. (Show gel)

Bouchal P, Precechtelová P, Zdráhal Z, Kucera I (2004) Protein composition of Paracoccus denitrificans cells grown on various electron acceptors and in the presence of azide. Proteomics 4: 2662-2671. (Show gel)

Bumann D, Habibi H, Kan B, Schmid M, Goosmann C, Brinkmann V, Meyer TF, Jungblut PR (2004) Lack of stage-specific proteins in coccoid Helicobacter pylori cells. Infect Immun 72: 6738-6742. (Show gels)

Hubalek M, Hernychova L, Brychta M, Lenco J, Zechovska J, Stulik J (2004) Comparative proteome analysis of cellular proteins extracted from highly virulent Francisella tularensis ssp. tularensis and less virulent F. tularensis ssp. holarctica and F. tularensis ssp. mediaasi. Proteomics 5: 2090-2103. (Show gel)

Kan B, Habibi H, Schmid M, Liang W, Wang R, Wang D, Jungblut PR (2004) Proteome Comparison of Vibrio cholerae Cultured in Aerobic and Anaerobic Conditions. Proteomics 4: 3061-3067. (Show gels)

Krah A, Miehlke S, Pleissner KP, Zimny-Arndt U, Kirsch C, Lehn N, Meyer TF, Jungblut PR, Aebischer T (2004) Identification of candidate antigens for serologic detection of Helicobacter pylori-infected patients with gastric carcinoma. Int J Cancer 108: 456-463. (Show gel)

Mattow J, Schmidt F, Hohenwarter W, Siejak F, Schaible UE, Kaufmann SHE (2004) Protein identification and tracking in two-dimensional electrophoretic gels by minimal protein identifiers. Proteomics 4: 2927-2941. (Show gel)

Mollenkopf HJ, Grode L, Mattow J, Stein M, Knapp B, Ulmer J, Kaufmann SHE (2004) Application of Mycobacterial Proteomics to Vaccine Design: Improved Protection by Mycobacterium bovis BCG Prime-Rv3407 DNA Boost Vaccination against Tuberculosis. Infect Immun 72: 6471-6479. (Show gels)

Okkels LM, Muller EC, Schmid M, Rosenkrands I, Kaufmann SH, Andersen P, Jungblut PR (2004) CFP10 discriminates between nonacetylated and acetylated ESAT-6 of Mycobacterium tuberculosis by differential interaction. Proteomics 4: 2954-2960. (Show gel)

Pleißner K-P, Eifert T, Büttner S, Schmidt F, Boehme M, Meyer TF, Kaufmann SHE, Jungblut PR (2004) Web-accessible proteome databases for microbial research. Proteomics 4: 1305-1313.

Schmidt F, Donahoe S, Hagens K, Mattow J, Schaible UE, Kaufmann SHE, Aebersold R, Jungblut PR (2004) Mycobacterium tuberculosis: Complementary analysis of the Mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope coded affinity tag technology. Mol Cell Proteomics 3: 24-42. (Show gels)

Tjalsma H, Antelmann H, Jongbloed JD, Braun PG, Darmon E, Dorenbos R, Dubois JY, Westers H, Zanen G, Quax WJ, Kuipers OP, Bron S, Hecker M, van Dijl JM (2004) Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome. Microbiol Mol Biol Rev 68: 207-233. (Show gels)

Wehrl W, Meyer TF, Jungblut PR, Müller E-C, Szczepek AJ (2004) Action and Reaction: Chlamydophila pneumoniae proteome alteration in a persistent infection induced by iron deficiency. Proteomics 4: 2969-2981. (Show gel)

Hubalek M, Hernychova L, Havlasova J, Kasalova I, Neubauerova V, Stulik J, Macela A, Lundqvist M, Larsson P (2003) Towards proteome database of Francisella tularensis. J Chromatogr B 787: 149-177. (Show gel)

Krah A, Schmidt F, Becher D, Schmid M, Albrecht D, Rack A, Büttner K, Jungblut PR (2003) Analysis of Automatically Generated Peptide Mass Fingerprints of Proteins and Antigens from /Helicobacter pylori/ 26695 Separated by Two-Dimensional Electrophoresis. Mol Cell Prot 2: 1271-1283. (Show gel)

Mattow J, Schaible UE, Schmidt F, Hagens K, Siejak F, Brestrich G, Haeselbarth G, Muller EC, Jungblut PR, Kaufmann SHE (2003) Comparative proteome analysis of culture supernatant proteins from virulent Mycobacterium tuberculosis H37Rv and attenuated M. bovis BCG Copenhagen. Electrophoresis 24: 3405-3420. (Show gels)

Schmidt F, Schmid M, Jungblut PR, Mattow J, Facius A, Pleissner K-P (2003) Iterative data analysis is the key for exhaustive analysis of peptide mass fingerprints from proteins separated by two-dimensional electrophoresis. J Am Soc Mass Spectrom 14: 943-956. (Show gels)

Aksu S, Scheler C, Focks N, Leenders F, Theuring F, Salnikow J, Jungblut PR (2002) An iterative calibration method with prediction of posttranslational modifications for the construction of a two-dimensional electrophoresis database of mouse mammary gland proteins. Proteomics 2: 1452-1463. (Show gel)

Bumann D, Aksu S, Wendland M, Janek K, Zimny-Arndt U, Sabarth N, Meyer TF, Jungblut PR (2002) Proteome analysis of secreted proteins of the gastric pathogen Helicobacter pylori. Inf Immun 70: 3396-3403. (Show gel)

Bumann D, Holland P, Siejak F, Koesling J, Sabarth N, Lamer S, Zimny-Arndt U, Jungblut PR, Meyer TF (2002) A comparison of murine and human immunoproteomes of Helicobacter pylori validates the pre-clinical murine infection model for human vaccine development. Inf Immun 70: 6494-6498.

Haas G, Karaali G, Ebermayer K, Metzger WG, Lamer S, Zimny-Arndt U, Diescher S, Goebel UB, Vogt K, Roznowski AB, Wiedenmann BJ, Meyer TF, Aebischer T, Jungblut PR (2002) Immunoproteomics of Helicobacter pylori infection and relation to gastric disease. Proteomics 2: 313-324. (Show gel)

Havlasova J, Hernychova L, Halada P, Pellantova V, Krejsek J, Stulik J, Macela A, Jungblut PR, Larsson P, Forsman M (2002) Mapping of immunoreactive antigens of Francisella tularensis live vaccine strain. Proteomics 2: 857-867. (Show gels)

Jungblut PR, Bumann D (2002) Immunoproteome of Helicobacter pylori. Methods Enzymol 358: 307-316. (Show gel)

Mollenkopf H-J, Mattow J, Schaible UE, Grode L, Kaufmann SHE, Jungblut PR (2002) Mycobacterial proteomes. Methods Enzymol 358: 242-256. (Show gels)

Pleißner K-P, Eifert T, Jungblut PR (2002) A European pathogenic microorganism proteome database: Construction and maintenance. Comp Funct Genom 3: 97-100.

Sabarth N, Lamer S, Zimny-Arndt U, Jungblut PR, Meyer TF, Bumann D (2002) Identification of surface proteins of Helicobacter pylori by selective biotinylation, affinity purification, two-dimensional gel electrophoresis. J Biol Chem 277: 27896-27902. (Show gel)

Thery C, Duban L, Segura E, Veron P, Lantz O, Amigorena S (2002) Indirect activation of naive CD4+ T cells by dendritic cell-derived exosomes. Nat Immunol 3: 1156-1162. (Show gel)

Ueberle B, Frank R, Herrmann R (2002) The proteome of the bacterium Mycoplasma pneumoniae: comparing predicted open reading frames to identified gene products. Proteomics 2: 754-764.

Ueberle B, Frank R, Herrmann R (2002) The proteome of the bacterium Mycoplasma pneumoniae: comparing predicted open reading frames to identified gene products. Proteomics 2: 754-764. (Show gel)

Backert S, Jungblut PR, Meyer TF (2001) Tyrosine phosphorylation patterns and size modification of the Helicobacter pylori CagA protein after translocation into gastric epithelial cells. Proteomics 1: 608-617. (Show gel)

Bumann D, Meyer TF, Jungblut PR (2001) Proteome analysis of the common human pathogen Helicobacter pylori. Proteomics 1: 473-479. (Show gel)

Hernychova L, Stulik J, Halada P, Macela A, Kroca M, Johansson T, Malina M (2001) Construction of a Francisella tularensis two-dimensional electrophoresis protein database. Proteomics 1: 508-515.

Jungblut PR (2001) Proteome analysis of microbial pathogens. Microbes and Infection 3: 831-840.

Jungblut PR, Müller E-C, Mattow J, Kaufmann SHE (2001) Proteomics reveals open reading frames in Mycobacterium tuberculosis not predicted by genomics. Inf Immun 69: 5905-5907.

Lamer S, Jungblut PR (2001) Matrix-assisted laser desorption-ionization mass spectrometry peptide mass fingerprinting for proteome analysis: identification efficiency after on-blot or in-gel digestion with and without desalting. J Chromatogr B 752: 311-322.

Mattow J, Jungblut PR, Müller E-C, Kaufmann SHE (2001) Identification of acidic, low molecular mass proteins of Mycobacterium tuberculosis strain H37Rv by MALDI- and ESI-mass spectrometry. Proteomics 1: 494-507. (Show gels)

Mattow J, Jungblut PR, Schaible UE, Mollenkopf H-J, Lamer S, Zimny-Arndt U, Hagens K, Müller E-C, Kaufmann SHE (2001) Identification of proteins from Mycobacterium tuberculosis missing in attenuated Mycobacterium bovis BCG strains. Electrophoresis 22: 2936-2946. (Show gels)

Moese S, Selbach M, Zimny-Arndt U, Jungblut PR, Meyer TF, Backert S (2001) Processing of the Helicobacter pylori CagA protein in phagocytic cells: Identification of a highly tyrosine-phosphorylated 35 kDa carboxy-terminal fragment (p35CagA). Proteomics 1: 618-629. (Show gel)

Vandahl BB, Birkelund S, Demol H, Hoorelbeke B, Christiansen G, Vandekerckhove J, Gevaert K (2001) Analysis of the Chlamydia pneumoniae elementary body. Electrophoresis 22: 1204-1223. (Show gel)

Jungblut PR, Bumann D, Haas G, Zimny-Arndt U, Holland P, Lamer S, Siejak F, Aebischer A, Meyer TF (2000) Comparative proteome analysis of H. pylori. Mol Microbiol 36: 710-725. (Show gel)

Regula JT, Ueberle B, Boguth G, Gorg A, Schnolzer M, Herrmann R, Frank R (2000) Towards a two-dimensional proteome map of Mycoplasma pneumoniae. Electrophoresis 21: 3765-3780.

Thiede B, Lamer S, Mattow J, Siejak F, Dimmler C, Rudel T, Jungblut PR (2000) Analysis of missed cleavage sites, tryptophan oxidation and N-terminal pyroglutamylation after in-gel tryptic digestion. Rapid Commun Mass Spectrom 14: 496-502. (Show gels)

Thiede B, Siejak F, Dimmler C, Jungblut PR, Rudel T (2000) A two dimensional electrophoresis database of a human Jurkat T-cell line. Electrophoresis 21: 2713-2720. (Show gel)

Jungblut PR, Grabher G, Stoffler G (1999) Comprehensive detection of immunorelevant Borrelia garinii antigens by two-dimensional electrophoresis. Electrophoresis 20: 3611-3622. (Show gel)

Jungblut PR, Schaible UE, Mollenkopf H-J, Zimny-Arndt U, Raupach B, Mattow J, Halada P, Lamer S, Kaufmann SHE (1999) Comparative proteome analysis of Mycobacterium tuberculosis and Mycobacterium bovis BCG strains: Towards functional genomics of microbial pathogens. Mol Microbiol 33: 1103-1117. (Show gels)

Mollenkopf H-J, Jungblut PR, Raupach B, Mattow J, Lamer S, Zimny-Arndt U, Schaible UE, Kaufmann SHE (1999) A dynamic bacterial 2D-PAGE database: The mycobacterial proteome via Internet. Electrophoresis 20: 2172-2180. (Show gels)

Jungblut PR, Otto A, Favor J, Löwe M, Müller E-C, Kastner M, Sperling K, Klose J (1998) Identification of the mouse crystallins in 2D protein patterns by sequencing and mass spectrometry. Application to cataract mutants. FEBS Lett 435: 131-137. (Show gels)

Zeindl-Eberhart E, Jungblut PR, Rabes HM (1997) A new method to assign immunodetected spots in the complex two-dimensional electrophoresis pattern. Electrophoresis 18: 799-801.

Jungblut, P, Thiede, B, Zimny-Arndt, U, Müller, EC, Scheler, C, Wittmann-Liebold, B, Otto, A (1996) Resolution power of two-dimensional electrophoresis and identification of proteins from gels. Electrophoresis 17: 839-847.

Jungblut PR, Seifert R (1990) Analysis by high-resolution two-dimensional electrophoresis of differentiation-dependent alterations in cytosolic protein pattern of HL-60 leukemic cells. J Biochem Biophys Meth 21: 47-58. (Show gel)